The program is compiled by entering this directory and typing
make cage
However, some include files and some libraries are needed which must be
installed somewhere on your computer. These are the files
tcl.h
tk.h
libX11.a
libtcl.so
libtk.so
If these files are not stored in the default directories for include
files and libraries (normally "/usr/include" and "/usr/lib"), then you
must provide the paths to the directories in which the files can be found.
This is done in the makefile.
In the current version of the makefile, two examples are given:
The "#" at the beginning of a line indicates that the line is a comment.
So in this example "/vol/local/include" is the directory in which the files
"tcl.h" and "tk.h" are searched for and "/vol/local/lib" and "/usr/lib" are
the directories in which the files "libX11.a", "libtcl.a" and "libtk.a" are
searched for.
Change the path specifications so that they fit to your system. Then type
"make cage".
Once the program "cage" is created, you can start it by typing
cage
Some problems
1) Shared libraries:
Tcl uses shared libraries. Therefore, e.g. under Linux,
the option -ldl is sometimes also required in the makefile.
/vol/X11/lib/libtcl.so: undefined reference to `dlerror'
/vol/X11/lib/libtcl.so: undefined reference to `dlopen'
/vol/X11/lib/libtcl.so: undefined reference to `dlsym'
2) Tcl and Tk versions:
Tcl and Tk versions are not very compatible. The actuell
version of CaGe requires Tcl 8.0 and Tk 8.0.
To know which version is installed, type:
wish
% put $tcl_version
8.0
% put $tk_version
8.0
If you are trying to run CaGe under Tcl 7.6 and Tk 4.2,
CaGe will work fine until you start one of the generating
programs and it will then cause an error:
Segmentation fault.
Some hints for usage
We hope that the usage of cage is self-explaining. However, here are
some hints:
- The window with the "Quit" button and the "Go to background" button
always remains on the screen as long as neither of these buttons is
pressed. By pressing the "Quit" button, you can exit the program.
By pressing the "Go to background" button, you can do the same, but
if there is one graph generation process running, it will not be
cancelled. It will continue in the background.
- After choosing a generation program, an option window appears.
Some of the options are included into a box named "extra options".
These options are only important for users who know the generation
program very well.
By pressing "Start", the graphs are generated.
By pressing "Cancel", you return to the window where you can choose
another generation program.
- If you choose 3D output, then "cage" pipes this output to other
programs. Two possibilities are offered:
- RasMol
- GeomView
You can only use these options if the relative programs are installed to
your system! Otherwise cage will cause an error. Furthermore, these
programs must be executable just by typing their names ("rasmol" or
"geomview", respectively) without any additional path information.
If you use RasMol, then you must move the mouse inside the RasMol window
after it appears on the screen. If you use GeomView, then notice that
GeomView is not quitted automatically if you quit cage. You must
quit it yourself. Furthermore, a pipe program named "togeomview" must
be provided.
If you have problems with the installation, contact
Sebastian Lisken.