Serialized Form

Package cage

Class cage.BackgroundWindow extends javax.swing.JFrame implements Serializable

Serialized Fields

runners

int runners

activeRunners

int activeRunners

displayedRunners

int displayedRunners

runnersPanel

javax.swing.JPanel runnersPanel

runnerControls

java.util.Vector runnerControls

foldnetThread

FoldnetThread foldnetThread

foldnetsPanel

javax.swing.JPanel foldnetsPanel

foldnetsLeft

javax.swing.JTextField foldnetsLeft

foldnetsSucceeded

javax.swing.JTextField foldnetsSucceeded

foldnetsFailed

javax.swing.JTextField foldnetsFailed

foldnetNext

javax.swing.JButton foldnetNext

exitPanel

javax.swing.JPanel exitPanel

msg1

javax.swing.JLabel msg1

msg2

javax.swing.JLabel msg2

exitButton

javax.swing.JButton exitButton

cancelButton

javax.swing.JButton cancelButton

exitSeparator

javax.swing.JSeparator exitSeparator

exitPhase

int exitPhase

stopButtonUsed

boolean stopButtonUsed

Class cage.CaGeTimer extends javax.swing.Timer implements Serializable

Serialized Fields

running

boolean running

runner

CaGeRunner runner

Class cage.CombinedGeneratorPanel extends GeneratorPanel implements Serializable

Serialized Fields

pane

javax.swing.JTabbedPane pane

notShown

boolean notShown

Class cage.FileFormatBox extends javax.swing.JComboBox implements Serializable

Serialized Fields

writers

java.util.Vector writers

dimension

int dimension

filenameField

javax.swing.text.JTextComponent filenameField

oldExtension

java.lang.String oldExtension

addExtension

boolean addExtension

Class cage.GeneratorPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

nextButton

javax.swing.JButton nextButton

previousButton

javax.swing.JButton previousButton

finishButton

javax.swing.JButton finishButton

cancelButton

javax.swing.JButton cancelButton

exitButton

javax.swing.JButton exitButton

Class cage.OutputPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

generatorInfo

GeneratorInfo generatorInfo

generatorInfoChanged

boolean generatorInfoChanged

generatorName

java.lang.String generatorName

viewersXD

java.util.Vector viewersXD

viewerErrors

java.lang.StringBuffer viewerErrors

defaultButton

javax.swing.JButton defaultButton

expertLabel

javax.swing.JLabel expertLabel

generatorCmdLine

javax.swing.JTextField generatorCmdLine

embed2DCmdLine

javax.swing.JTextField embed2DCmdLine

embed3DCmdLine

javax.swing.JTextField embed3DCmdLine

viewersXDGroup

SyncButtonGroup viewersXDGroup

outPreFilterCheckBox

javax.swing.JCheckBox outPreFilterCheckBox

outPreFilterCommand

javax.swing.JTextField outPreFilterCommand

out3DCheckBox

javax.swing.JCheckBox out3DCheckBox

out3DDestGroup

javax.swing.ButtonGroup out3DDestGroup

out3DViewer

javax.swing.JRadioButton out3DViewer

out3DFile

javax.swing.JRadioButton out3DFile

out3DPipe

javax.swing.JRadioButton out3DPipe

out3DViewerGroup

Min1ButtonGroup out3DViewerGroup

out3DFilePanel

TargetPanel out3DFilePanel

out3DPipePanel

TargetPanel out3DPipePanel

out2DCheckBox

javax.swing.JCheckBox out2DCheckBox

out2DDestGroup

javax.swing.ButtonGroup out2DDestGroup

out2DViewer

javax.swing.JRadioButton out2DViewer

out2DFile

javax.swing.JRadioButton out2DFile

out2DPipe

javax.swing.JRadioButton out2DPipe

out2DViewerGroup

Min1ButtonGroup out2DViewerGroup

out2DFilePanel

TargetPanel out2DFilePanel

out2DPipePanel

TargetPanel out2DPipePanel

outAdjDestGroup

javax.swing.ButtonGroup outAdjDestGroup

outAdjFile

javax.swing.JRadioButton outAdjFile

outAdjPipe

javax.swing.JRadioButton outAdjPipe

outAdjFilePanel

TargetPanel outAdjFilePanel

outAdjPipePanel

TargetPanel outAdjPipePanel

expertControlsGroup

ComponentLogicalGroup expertControlsGroup

embedControlsGroup

ComponentLogicalGroup embedControlsGroup

generatorControlsGroup

ComponentLogicalGroup generatorControlsGroup

Class cage.ResultPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

generator

CaGePipe generator

generatorInfo

GeneratorInfo generatorInfo

embedder

Embedder embedder

embedThread

EmbedThread embedThread

results

CaGeResultList results

viewers

CaGeViewer[] viewers

writers

CaGeWriter[] writers

timer

CaGeTimer timer

doEmbed2D

boolean doEmbed2D

doEmbed3D

boolean doEmbed3D

useViewers

boolean useViewers

stopping

boolean stopping

running

boolean running

highestGeneratedGraphNo

int highestGeneratedGraphNo

pipeGraphNo

javax.swing.JTextField pipeGraphNo

viewGraphNo

javax.swing.JTextField viewGraphNo

advanceDist

SpinButton advanceDist

advance1Button

javax.swing.JButton advance1Button

advanceButton

javax.swing.JButton advanceButton

reviewPrevButton

javax.swing.JButton reviewPrevButton

reviewNextButton

javax.swing.JButton reviewNextButton

reviewPrevLabel

cage.ResultPanel.GraphNoLabel reviewPrevLabel

reviewCurrLabel

cage.ResultPanel.GraphNoLabel reviewCurrLabel

reviewNextLabel

cage.ResultPanel.GraphNoLabel reviewNextLabel

flowButton

javax.swing.JToggleButton flowButton

previousFocusOwner

javax.swing.JComponent previousFocusOwner

statusPanel

javax.swing.JPanel statusPanel

statusFont

java.awt.Font statusFont

status

javax.swing.JLabel status

statusMap

java.util.TreeMap statusMap

stopListener

java.awt.event.ActionListener stopListener

saveAdjButton

javax.swing.AbstractButton saveAdjButton

save2DButton

javax.swing.AbstractButton save2DButton

save3DButton

javax.swing.AbstractButton save3DButton

saveAdjWriter

CaGeWriter saveAdjWriter

save2DWriter

CaGeWriter save2DWriter

save3DWriter

CaGeWriter save3DWriter

foldnetButton

javax.swing.AbstractButton foldnetButton

foldnetDialog

SavePSDialog foldnetDialog

Class cage.SaveDialog extends FlaggedJDialog implements Serializable

Serialized Fields

content

javax.swing.JPanel content

saveFilenameField

javax.swing.JTextField saveFilenameField

infoLabel

javax.swing.JLabel infoLabel

saveInfoField

javax.swing.JTextField saveInfoField

includeInfoBox

javax.swing.JCheckBox includeInfoBox

fileFormatBox

FileFormatBox fileFormatBox

Class cage.SavePSDialog extends SaveDialog implements Serializable

Class cage.TargetPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

fileFormat

FileFormatBox fileFormat

fileName

javax.swing.JTextField fileName

targetTemplate

java.lang.String targetTemplate

addExtension

boolean addExtension

Package cage.generator

Class cage.generator.BoundaryHCgenPanel extends GeneratorPanel implements Serializable

Serialized Fields

boundaryList

javax.swing.JTextField boundaryList

numberOfPentagonsLabel

javax.swing.JLabel numberOfPentagonsLabel

iprBox

javax.swing.JCheckBox iprBox

showHBox

javax.swing.JCheckBox showHBox

Class cage.generator.CGFPanel extends GeneratorPanel implements Serializable

Serialized Fields

dual

boolean dual

minAtomsSlider

EnhancedSlider minAtomsSlider

maxAtomsSlider

EnhancedSlider maxAtomsSlider

faceStats

javax.swing.JCheckBox faceStats

conn1

javax.swing.JCheckBox conn1

conn2

javax.swing.JCheckBox conn2

conn3

javax.swing.JCheckBox conn3

sizeOptionsMap

SizeOptionsMap sizeOptionsMap

Class cage.generator.DiskTriangulationsPanel extends GeneratorPanel implements Serializable

Serialized Fields

verticesSlider

EnhancedSlider verticesSlider

boundarySegmentsSlider

EnhancedSlider boundarySegmentsSlider

boundarySegmentsAll

javax.swing.JCheckBox boundarySegmentsAll

chordsButton

javax.swing.AbstractButton[] chordsButton

chordsGroup

javax.swing.ButtonGroup chordsGroup

vertices2Button

javax.swing.AbstractButton[] vertices2Button

vertices2Group

javax.swing.ButtonGroup vertices2Group

Class cage.generator.EulerianTriangulationsPanel extends GeneratorPanel implements Serializable

Serialized Fields

dual

boolean dual

Is this panel in the normal mode or the dual mode? This needs to be set on construction, i.e. the dual state of the panel is immutable.

verticesSlider

EnhancedSlider verticesSlider

minConnGroup

javax.swing.ButtonGroup minConnGroup

exactConn

javax.swing.JCheckBox exactConn

Class cage.generator.ExternalPanel extends GeneratorPanel implements Serializable

Serialized Fields

defaultButton

javax.swing.JButton defaultButton

externalCmdButton

javax.swing.JRadioButton externalCmdButton

externalCmd

javax.swing.JTextField externalCmd

fromFileButton

javax.swing.JRadioButton fromFileButton

fromFileCmd

javax.swing.JTextField fromFileCmd

commandGroup

javax.swing.ButtonGroup commandGroup

embeddedModeGroup

javax.swing.ButtonGroup embeddedModeGroup

embedTemplateGroup

javax.swing.ButtonGroup embedTemplateGroup

nonNullCmd

boolean nonNullCmd

embedderRequired

boolean embedderRequired

embedderIsConstant

boolean embedderIsConstant

embedIntensity

EnhancedSlider embedIntensity

embedExpertBox

javax.swing.JCheckBox embedExpertBox

Class cage.generator.FormulaHCgenPanel extends GeneratorPanel implements Serializable

Serialized Fields

C

int C

H

int H

pentagons

int pentagons

minC

int minC

maxC

int maxC

minH

int minH

maxH

int maxH

minPent

int minPent

maxPent

int maxPent

COk

boolean COk

HOk

boolean HOk

pentagonsOk

boolean pentagonsOk

parityOk

boolean parityOk

CSlider

EnhancedSlider CSlider

minCButton

javax.swing.JButton minCButton

maxCButton

javax.swing.JButton maxCButton

HSlider

EnhancedSlider HSlider

minHButton

javax.swing.JButton minHButton

maxHButton

javax.swing.JButton maxHButton

pentSlider

EnhancedSlider pentSlider

minPentButton

javax.swing.JButton minPentButton

maxPentButton

javax.swing.JButton maxPentButton

HGapSlider

EnhancedSlider HGapSlider

ipr

javax.swing.JCheckBox ipr

includeH

javax.swing.JCheckBox includeH

peri

javax.swing.JCheckBox peri

defaultButton

javax.swing.JButton defaultButton

Class cage.generator.FourRegularPlaneGraphsPanel extends CombinedGeneratorPanel implements Serializable

Class cage.generator.FullgenPanel extends GeneratorPanel implements Serializable

Serialized Fields

embedderIsConstant

boolean embedderIsConstant

FullgenAtomsPanel

javax.swing.JPanel FullgenAtomsPanel

minAtomsLabel

javax.swing.JLabel minAtomsLabel

maxAtomsLabel

javax.swing.JLabel maxAtomsLabel

minAtomsSlider

EnhancedSlider minAtomsSlider

maxAtomsSlider

EnhancedSlider maxAtomsSlider

sep1

javax.swing.JSeparator sep1

FullgenExtrasPanel

javax.swing.JPanel FullgenExtrasPanel

minEqMax

javax.swing.JCheckBox minEqMax

ipr

javax.swing.JCheckBox ipr

dual

javax.swing.JCheckBox dual

spiralStats

javax.swing.JCheckBox spiralStats

symmStats

javax.swing.JCheckBox symmStats

symmetryFilterButton

javax.swing.JToggleButton symmetryFilterButton

symmetriesOkButton

javax.swing.JButton symmetriesOkButton

symmetriesAllButton

javax.swing.JButton symmetriesAllButton

symmetriesDialog

FlaggedJDialog symmetriesDialog

symmetry

java.lang.String[] symmetry

symmetries

int symmetries

symmetryButton

javax.swing.AbstractButton[] symmetryButton

selectedSymmetry

boolean[] selectedSymmetry

symmRows

int symmRows

cases

int cases

selectedSymmetries

int selectedSymmetries

Class cage.generator.GeneralPlaneGraphsPanel extends GeneratorPanel implements Serializable

Serialized Fields

dual

javax.swing.JCheckBox dual

verticesSlider

EnhancedSlider verticesSlider

minDegGroup

javax.swing.ButtonGroup minDegGroup

minConnGroup

javax.swing.ButtonGroup minConnGroup

minEdges

SpinButton minEdges

maxEdges

SpinButton maxEdges

defaultEdges

javax.swing.JCheckBox defaultEdges

maxFacesize

SpinButton maxFacesize

defaultMaxFacesize

javax.swing.JCheckBox defaultMaxFacesize

degButtons

javax.swing.JRadioButton[] degButtons

connButtons

javax.swing.JRadioButton[] connButtons

exactConn

javax.swing.JCheckBox exactConn

Class cage.generator.GeneralQuadrangulationsPanel extends GeneratorPanel implements Serializable

Serialized Fields

dual

boolean dual

Is this panel in the normal mode or the dual mode? This needs to be set on construction, i.e. the dual state of the panel is immutable.

verticesSlider

EnhancedSlider verticesSlider

optionGroup

javax.swing.ButtonGroup optionGroup

Class cage.generator.GeneralTriangulationsPanel extends GeneratorPanel implements Serializable

Serialized Fields

dual

boolean dual

Is this panel in the normal mode or the dual mode? This needs to be set on construction, i.e. the dual state of the panel is immutable.

verticesSlider

EnhancedSlider verticesSlider

minDegGroup

javax.swing.ButtonGroup minDegGroup

degButton

javax.swing.AbstractButton[] degButton

minConnGroup

javax.swing.ButtonGroup minConnGroup

connButton

javax.swing.AbstractButton[] connButton

exactConn

javax.swing.JCheckBox exactConn

Class cage.generator.HCgenPanel extends CombinedGeneratorPanel implements Serializable

Class cage.generator.HexagonsHCgenPanel extends GeneratorPanel implements Serializable

Serialized Fields

hexagonsSlider

EnhancedSlider hexagonsSlider

iprBox

javax.swing.JCheckBox iprBox

showHBox

javax.swing.JCheckBox showHBox

cataCondensedBox

javax.swing.JCheckBox cataCondensedBox

benzenoidBox

javax.swing.JCheckBox benzenoidBox

kekuleBox

javax.swing.JCheckBox kekuleBox

defaultButton

javax.swing.JButton defaultButton

Class cage.generator.NanoConesPanel extends GeneratorPanel implements Serializable

Serialized Fields

numberOfPentagonsSlider

EnhancedSlider numberOfPentagonsSlider

lengthOfSide

SpinButton lengthOfSide

hexagonLayers

SpinButton hexagonLayers

symmetricButton

javax.swing.JRadioButton symmetricButton

nearSymmetricButton

javax.swing.JRadioButton nearSymmetricButton

symmetricGroup

javax.swing.ButtonGroup symmetricGroup

iprBox

javax.swing.JCheckBox iprBox

hexagonLayersBox

javax.swing.JCheckBox hexagonLayersBox

Class cage.generator.PlaneTriangulationsPanel extends CombinedGeneratorPanel implements Serializable

Class cage.generator.QuadrangulationsPanel extends CombinedGeneratorPanel implements Serializable

Class cage.generator.QuadRestrictPanel extends GeneratorPanel implements Serializable

Serialized Fields

dual

boolean dual

Is this panel in the normal mode or the dual mode? This needs to be set on construction, i.e. the dual state of the panel is immutable.

verticesSlider

EnhancedSlider verticesSlider

sizeOptionsMap

SizeOptionsMap sizeOptionsMap

Class cage.generator.SizeOptionsMap extends java.util.TreeMap implements Serializable

Serialized Fields

optionsPanel

javax.swing.JPanel optionsPanel

sizesComponent

java.awt.Component sizesComponent

sizesModel

javax.swing.BoundedRangeModel sizesModel

includedButton

javax.swing.JToggleButton includedButton

dual

boolean dual

limitable

boolean limitable

changeListenersList

java.util.List changeListenersList

e

javax.swing.event.ChangeEvent e

Class cage.generator.ThreeRegularPlaneGraphsPanel extends CombinedGeneratorPanel implements Serializable

Class cage.generator.TriangulationsPanel extends CombinedGeneratorPanel implements Serializable

Serialized Fields

lastChosenPanel

GeneratorPanel lastChosenPanel

Class cage.generator.TubesConesPanel extends GeneratorPanel implements Serializable

Serialized Fields

pane

javax.swing.JTabbedPane pane

Class cage.generator.TubetypePanel extends GeneratorPanel implements Serializable

Serialized Fields

tubelengthSlider

EnhancedSlider tubelengthSlider

offset1Control

EnhancedSlider offset1Control

offset2Control

EnhancedSlider offset2Control

ipr

javax.swing.JCheckBox ipr

defaultTubelengthButton

javax.swing.AbstractButton defaultTubelengthButton

adjusting

boolean adjusting

Package cage.viewer.jmol

Class cage.viewer.jmol.AboutJmolPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

viewer

org.jmol.api.JmolViewer viewer

Class cage.viewer.jmol.DefaultJmolAction extends JmolAction implements Serializable

Serialized Fields

command

java.lang.String command

Class cage.viewer.jmol.JmolAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

viewer

org.jmol.api.JmolViewer viewer

Class cage.viewer.jmol.JmolColorAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

previewModel

javax.swing.ButtonModel previewModel

colorModel

javax.swing.colorchooser.ColorSelectionModel colorModel

chooser

javax.swing.JColorChooser chooser

parentComponent

java.awt.Component parentComponent

Class cage.viewer.jmol.JmolExportImageAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

panel

JmolPanel panel

Class cage.viewer.jmol.JmolPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

viewer

org.jmol.api.JmolViewer viewer

adapter

CaGeJmolAdapter adapter

currentSize

java.awt.Dimension currentSize

rectClip

java.awt.Rectangle rectClip

preferredSize

java.awt.Dimension preferredSize

Class cage.viewer.jmol.JmolToggleMenuItem extends javax.swing.JCheckBoxMenuItem implements Serializable

Class cage.viewer.jmol.JmolTranslucentColorAction extends JmolColorAction implements Serializable

Class cage.viewer.jmol.ShowWindowAction extends javax.swing.AbstractAction implements Serializable

Serialized Fields

window

javax.swing.JFrame window

Class cage.viewer.jmol.ToolWindow extends javax.swing.JFrame implements Serializable

Class cage.viewer.jmol.ViewAction extends JmolAction implements Serializable

Serialized Fields

command

java.lang.String command

Class cage.viewer.jmol.ZoomAction extends JmolAction implements Serializable

Serialized Fields

command

java.lang.String command

Package cage.viewer.twoview

Class cage.viewer.twoview.TwoViewPanel extends javax.swing.JPanel implements Serializable

Serialized Fields

showNumbers

boolean showNumbers

graphSize

int graphSize

vertexID

int vertexID

vertexSize

int vertexSize

edgeWidth

int edgeWidth

result

CaGeResult result

embedder

Embedder embedder

reembed2DDisabled

boolean reembed2DDisabled

vertexImage

java.awt.Image vertexImage

vertexFontArray

java.awt.Font[] vertexFontArray

vertexFont

java.awt.Font vertexFont

sizeButtonListener

java.awt.event.ActionListener sizeButtonListener

showNumbersButton

javax.swing.AbstractButton showNumbersButton

resetButton

javax.swing.AbstractButton resetButton

resultPanel

ResultPanel resultPanel

painter

TwoViewPainter painter

twoView

TwoView twoView

graphics

java.awt.Graphics graphics

edgeColor

java.awt.Color edgeColor

numbersColor

java.awt.Color numbersColor

px

int[] px

py

int[] py

fontMetrics

java.awt.FontMetrics fontMetrics

ascent

int ascent

Package lisken.systoolbox

Class lisken.systoolbox.ExceptionGroup extends java.lang.Exception implements Serializable

Serialized Fields

exceptionV

java.util.Vector exceptionV

Package lisken.uitoolbox

Class lisken.uitoolbox.AutosizedTextArea extends javax.swing.JTextArea implements Serializable

Serialized Fields

size

java.awt.Dimension size

Class lisken.uitoolbox.EnhancedSlider extends javax.swing.JPanel implements Serializable

Serialized Fields

slider

javax.swing.JSlider slider

valueLabel

lisken.uitoolbox.EnhancedSlider.SliderValueLabel valueLabel

snapWhileDragging

int snapWhileDragging

snapping

boolean snapping

snappedValue

int snappedValue

paintMinorTicks

boolean paintMinorTicks

sizeFactor

double sizeFactor

clickScrollByBlock

boolean clickScrollByBlock

Class lisken.uitoolbox.FlaggedJDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

success

boolean success

cancelButton

javax.swing.AbstractButton cancelButton

nearComponent

java.awt.Component nearComponent

Class lisken.uitoolbox.NumberDocument extends javax.swing.text.PlainDocument implements Serializable

Serialized Fields

allowSign

boolean allowSign

Class lisken.uitoolbox.OrderedChoice extends javax.swing.JPanel implements Serializable

Serialized Fields

addButton

javax.swing.JButton addButton

removeButton

javax.swing.JButton removeButton

upButton

javax.swing.JButton upButton

downButton

javax.swing.JButton downButton

choiceList

javax.swing.JList choiceList

selectionList

javax.swing.JList selectionList

listSize

java.awt.Dimension listSize

choicePane

javax.swing.JScrollPane choicePane

selectionPane

javax.swing.JScrollPane selectionPane

choices

java.lang.Object[] choices

position

int[] position

choice

java.util.Vector choice

selection

java.util.Vector selection

highlight

java.util.Vector highlight

dialogCompleted

boolean dialogCompleted

noEmptySelection

boolean noEmptySelection

building

boolean building

Class lisken.uitoolbox.PushButton extends javax.swing.JButton implements Serializable

Serialized Fields

upBorder

javax.swing.border.Border upBorder

downBorder

javax.swing.border.Border downBorder

otherBorder

javax.swing.border.Border otherBorder

Class lisken.uitoolbox.SpinButton extends javax.swing.JPanel implements Serializable

Serialized Fields

text

lisken.uitoolbox.SpinButton.EnhancedTextField text

buttonPanel

javax.swing.JPanel buttonPanel

up

lisken.uitoolbox.SpinButton.ImageButton up

down

lisken.uitoolbox.SpinButton.ImageButton down

sep

javax.swing.JSeparator sep

lastH

int lastH

model

javax.swing.BoundedRangeModel model

value

int value

minValue

int minValue

maxValue

int maxValue