A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

R

RasmolViewer - Class in cage.viewer

RasmolViewer() - Constructor for class cage.viewer.RasmolViewer

reactivate() - Method in class cage.generator.SizeOption

read() - Method in class lisken.systoolbox.BufferedFDInputStream

reader_fd - Variable in class lisken.systoolbox.Pipe

reembed2D(EmbeddableGraph) - Method in class cage.Embedder

reembed2DMade - Variable in class cage.CaGeResult

reembed2DRequired(EmbeddableGraph, float, float) - Method in class cage.Embedder

Returns whether the graph needs to be reembedded for the point (x, y) to lie in the outer face or not.

REFINE_OLD_EMBEDDING - Static variable in class cage.Embedder

remove() - Method in class cage.NativeEdgeIterator

Throws UnsupportedOperationException because edges can't be removed.

remove(AbstractButton) - Method in class cage.utility.AbstractButtonGroup

Remove button from this group and do nothing if it wasn't in this group.

remove(AbstractButton) - Method in interface cage.utility.GenericButtonGroup

Remove button from this group and do nothing if it wasn't in this group.

remove(AbstractButton) - Method in class cage.utility.Min1ButtonGroup

removeActionListener(ActionListener) - Method in class cage.TargetPanel

removeChangeListener(ChangeListener) - Method in class cage.generator.SizeOptionsMap

Remove a ChangeListener from this object.

removeChangeListener(ChangeListener) - Method in class lisken.uitoolbox.EnhancedSlider

removeChangeListener(ChangeListener) - Method in class lisken.uitoolbox.SpinButton

removeComponent(Component) - Method in class cage.utility.ComponentLogicalGroup

Removes the specified component from this group.

removePropertyChangeListener(PropertyChangeListener) - Method in class cage.BackgroundRunner

removePropertyChangeListener(PropertyChangeListener) - Method in class cage.CaGePipe

removePropertyChangeListener(PropertyChangeListener) - Method in interface cage.CaGeRunner

removePropertyChangeListener(PropertyChangeListener) - Method in class cage.FoldnetThread

removeUpdate(DocumentEvent) - Method in class cage.OutputPanel

replace(String, String, String) - Static method in class lisken.systoolbox.Systoolbox

requests2D() - Method in class cage.OutputPanel

requests3D() - Method in class cage.OutputPanel

reset() - Method in class cage.ResultPanel

resetEmbedding() - Method in class cage.viewer.twoview.TwoViewPanel

resetStopButtonUsed() - Method in class cage.BackgroundWindow

restrictScrollPaneToScreenPart(JScrollPane, float, float) - Static method in class lisken.uitoolbox.UItoolbox

restrictSizeToScreenPart(Dimension, float, float) - Static method in class lisken.uitoolbox.UItoolbox

Restricts a dimension to a certain percentage of the screen size.

restrictSizeToScreenPart(Component, float, float) - Static method in class lisken.uitoolbox.UItoolbox

Returns the dimension of this component restricted to a certain percentage of the screen size.

ResultPanel - Class in cage

ResultPanel(CaGePipe, GeneratorInfo, boolean, boolean, Vector, Vector) - Constructor for class cage.ResultPanel

RIGHT - Static variable in class cage.viewer.jmol.ViewAction

run() - Method in class cage.BackgroundRunner

run() - Method in class cage.BackgroundWindow

run() - Method in class cage.EmbedThread

run() - Method in class cage.FoldnetThread

RUN_LEVEL - Static variable in class cage.ResultPanel

runDialog(String) - Method in class lisken.uitoolbox.OrderedChoice

runDir - Variable in class lisken.systoolbox.Pipe