A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

C

cage - package cage

Contains the main classes for the Java GUI of CaGe.

CaGe - Class in cage

cage.embedder - package cage.embedder

Contains several embedders written in Java that can be used with CaGe.

cage.generator - package cage.generator

Contains the panels used to configure the different generators in CaGe.

cage.utility - package cage.utility

Contains a set of utility classes used for the configuration of the generators.

cage.viewer - package cage.viewer

Contains the different Viewers that can be used in CaGe.

cage.viewer.jmol - package cage.viewer.jmol

Provides an interface to Jmol that can be used to visualize graphs in CaGe.

cage.viewer.twoview - package cage.viewer.twoview

Contains the classes needed for TwoView.

cage.writer - package cage.writer

Contains several writers which can export a graph to a certain format.

CaGeEmbeddingTypeFactory - Class in cage

Implementation of EmbeddingTypeFactory which offers access to the default embedding types available in CaGe.

CaGeEmbeddingTypeFactory() - Constructor for class cage.CaGeEmbeddingTypeFactory

CaGeJmolAdapter - Class in cage.viewer.jmol

CaGeJmolAdapter() - Constructor for class cage.viewer.jmol.CaGeJmolAdapter

CaGeJmolViewer - Class in cage.viewer

CaGeJmolViewer() - Constructor for class cage.viewer.CaGeJmolViewer

CaGeListener - Class in cage

CaGeListener() - Constructor for class cage.CaGeListener

CaGeOutlet - Interface in cage

An interface common to all possible types of output in CaGe, i.e.

CaGePipe - Class in cage

CaGePipe(String[][], String, String, String) - Constructor for class cage.CaGePipe

CaGeResult - Class in cage

CaGeResult(EmbeddableGraph, int) - Constructor for class cage.CaGeResult

CaGeResultList - Class in cage

A result "collection" of CaGe's production process, with some methods to traverse it.

CaGeResultList() - Constructor for class cage.CaGeResultList

CaGeRunner - Interface in cage

CaGeStarter - Class in cage

CaGeStarter(OutputPanel) - Constructor for class cage.CaGeStarter

CaGeTimer - Class in cage

CaGeTimer(CaGeRunner, int) - Constructor for class cage.CaGeTimer

CaGeViewer - Interface in cage.viewer

Interface that must be implemented by viewers for CaGe.

CaGeWriter - Class in cage.writer

CaGeWriter() - Constructor for class cage.writer.CaGeWriter

CANCEL - Static variable in class lisken.uitoolbox.Wizard

canCreat(File) - Static method in class lisken.systoolbox.Systoolbox

centerOnScreen(Component) - Static method in class lisken.uitoolbox.UItoolbox

Centers a component on the screen.

CGFPanel - Class in cage.generator

CGFPanel() - Constructor for class cage.generator.CGFPanel

CGFPanel(boolean) - Constructor for class cage.generator.CGFPanel

changedUpdate(DocumentEvent) - Method in class cage.OutputPanel

checkAvailability(String, int) - Static method in class cage.viewer.ViewerFactory

Returns whether the given type of viewer is available for the given dimension.

checkForExit() - Method in class lisken.systoolbox.Pipe

chooser - Variable in class cage.viewer.jmol.JmolColorAction

clearStatus(int) - Method in class cage.ResultPanel

clearStatus(int, boolean) - Method in class cage.ResultPanel

close() - Method in class lisken.systoolbox.BufferedFDInputStream

close() - Method in class lisken.systoolbox.BufferedFDOutputStream

cmds - Variable in class lisken.systoolbox.Pipe

CMLWriter - Class in cage.writer

CMLWriter() - Constructor for class cage.writer.CMLWriter

colorModel - Variable in class cage.viewer.jmol.JmolColorAction

colorToString(Color) - Static method in class cage.viewer.jmol.JmolColorChangeListener

colorToString(Color) - Static method in class cage.viewer.jmol.JmolTranslucentColorChangeListener

CombinedGeneratorPanel - Class in cage

GeneratorPanel that combines several GeneratorPanels on a JTabbedPane.

CombinedGeneratorPanel() - Constructor for class cage.CombinedGeneratorPanel

compareTo(Object) - Method in class lisken.systoolbox.MutableInteger

component - Variable in class cage.viewer.jmol.JmolColorChangeListener

component - Variable in class cage.viewer.jmol.JmolTranslucentColorChangeListener

ComponentLogicalGroup - Class in cage.utility

Class that groups a set of Components in a logical group.

ComponentLogicalGroup() - Constructor for class cage.utility.ComponentLogicalGroup

Constructs an empty ComponentLogicalGroup object.

config - Static variable in class cage.CaGe

configFile - Static variable in class cage.CaGe

countCharOccurence(char, String) - Method in class cage.generator.BoundaryHCgenPanel

createCaGeWriter(String) - Static method in class cage.writer.WriterFactory

Returns a CaGeWriter based on the given format.

createEmbedder(String[][], String[][]) - Static method in class cage.EmbedFactory

Creates a native, non-constant embedder that ignores old embeddings and with an intensity factor of 1.0.

createEmbedder(boolean, String[][], String[][]) - Static method in class cage.EmbedFactory

Creates a native embedder that ignores old embeddings and with an intensity factor of 1.0.

createEmbedder(boolean, boolean, String[][], String[][]) - Static method in class cage.EmbedFactory

Creates an embedder that ignores old embeddings and with an intensity factor of 1.0.

createEmbedder(String[][], String[][], float, int) - Static method in class cage.EmbedFactory

Creates a native, non-constant embedder.

createEmbedder(boolean, String[][], String[][], float, int) - Static method in class cage.EmbedFactory

Creates a native embedder.

createEmbedder(boolean, boolean, String[][], String[][], float, int) - Static method in class cage.EmbedFactory

Creates an embedder.

createExpertMode(int, int) - Static method in class cage.GeneratorInfo

Creates an expert mode that both stores the included modes as the explicitly excluded modes.

createOutputStream(String) - Static method in class lisken.systoolbox.Systoolbox

createOutputStream(String, String) - Static method in class lisken.systoolbox.Systoolbox

createOutputStream(String, String, boolean) - Static method in class lisken.systoolbox.Systoolbox

createStandardLabels(int) - Method in class lisken.uitoolbox.EnhancedSlider

createStandardLabels(int, int) - Method in class lisken.uitoolbox.EnhancedSlider

creatFilePanel(String, int, int) - Static method in class cage.TargetPanel

Convenience method for the creation of a TargetPanel for a file.

creatPipePanel(String, int, int) - Static method in class cage.TargetPanel

Convenience method for the creation of a TargetPanel for a pipe.