A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

S

saved2D - Variable in class cage.CaGeResult

saved2DPS - Variable in class cage.CaGeResult

saved3D - Variable in class cage.CaGeResult

savedAdj - Variable in class cage.CaGeResult

SaveDialog - Class in cage

SaveDialog(String) - Constructor for class cage.SaveDialog

SaveDialog(Frame, String) - Constructor for class cage.SaveDialog

SaveDialog(String, boolean) - Constructor for class cage.SaveDialog

SaveDialog(Frame, String, boolean) - Constructor for class cage.SaveDialog

SaveDialog(String, String) - Constructor for class cage.SaveDialog

SaveDialog(Frame, String, String) - Constructor for class cage.SaveDialog

savePostScript() - Method in class cage.viewer.TwoView

savePSButtonPressed() - Method in class cage.viewer.TwoView

SavePSDialog - Class in cage

SavePSDialog(String) - Constructor for class cage.SavePSDialog

SavePSDialog(Frame, String) - Constructor for class cage.SavePSDialog

SavePSDialog(Frame, String, boolean) - Constructor for class cage.SavePSDialog

set2DCoordinates(int, float[]) - Method in interface cage.EmbeddableGraph

set2DCoordinates(int, float[]) - Method in class cage.NativeEmbeddableGraph

set3DCoordinates(int, float[]) - Method in interface cage.EmbeddableGraph

set3DCoordinates(int, float[]) - Method in class cage.NativeEmbeddableGraph

setActive(boolean) - Method in class cage.utility.Min1ButtonGroup

setBorder(Border) - Method in class lisken.uitoolbox.AutosizedTextArea

setBorder(Border) - Method in class lisken.uitoolbox.PushButton

setCancelButton(JButton) - Method in class cage.CombinedGeneratorPanel

setCancelButton(JButton) - Method in class cage.GeneratorPanel

Set the current cancel button in the wizard.

setCancelButton(AbstractButton) - Method in class lisken.uitoolbox.FlaggedJDialog

setCancelButton(JButton) - Method in interface lisken.uitoolbox.WizardAwareComponent

Makes the component aware of the cancel button.

setClickScrollByBlock(boolean) - Method in class lisken.uitoolbox.EnhancedSlider

setComment(String) - Method in interface cage.EmbeddableGraph

setComment(String) - Method in class cage.NativeEmbeddableGraph

setConstant(boolean) - Method in class cage.Embedder

setDefaultButton(JButton) - Method in class lisken.uitoolbox.FlaggedJDialog

setDefaultButton(JRootPane) - Method in class lisken.uitoolbox.WizardStage

setDiagnosticOutput(String) - Method in class cage.EmbedThread

setDimension(int) - Method in interface cage.CaGeOutlet

Sets the dimension for which this outlet will be used.

setDimension(int) - Method in class cage.viewer.CaGeJmolViewer

setDimension(int) - Method in class cage.viewer.RasmolViewer

setDimension(int) - Method in class cage.viewer.TextViewer

setDimension(int) - Method in class cage.viewer.TwoView

setDimension(int) - Method in class cage.writer.CaGeWriter

setEdgeBrightness(float) - Method in class cage.viewer.TwoView

setEdgeBrightness(float) - Method in class cage.viewer.twoview.TwoViewPanel

setEdgeWidth(int) - Method in class cage.viewer.twoview.TwoViewPanel

setEmbed2D(String[][]) - Method in class cage.Embedder

setEmbed3D(String[][]) - Method in class cage.Embedder

setEmbedder(Embedder) - Method in class cage.GeneratorInfo

Sets the embedder to be used for this generator.

setEmbedder(Embedder) - Method in class cage.StaticGeneratorInfo

setEmbedThreadListener(EmbedThreadListener) - Method in class cage.EmbedThread

setEnabled(boolean) - Method in class cage.utility.ComponentLogicalGroup

Enables or disables the components in this group depending on the value of parameter enabled.

setEnabled(boolean) - Method in class lisken.uitoolbox.EnhancedSlider

setEnabled(boolean) - Method in class lisken.uitoolbox.SpinButton

setExitButton(JButton) - Method in class cage.CombinedGeneratorPanel

setExitButton(JButton) - Method in class cage.GeneratorPanel

Set the current exit button in the wizard.

setExitButton(JButton) - Method in interface lisken.uitoolbox.WizardAwareComponent

Makes the component aware of the exit button.

setExtent(int) - Method in class lisken.uitoolbox.EnhancedSlider

setField(JTextComponent) - Method in class lisken.uitoolbox.JTextComponentFocusSelector

Adds this focus selector to the text component tc.

setFilename(String) - Method in class cage.SaveDialog

setFinishButton(JButton) - Method in class cage.CombinedGeneratorPanel

setFinishButton(JButton) - Method in class cage.GeneratorPanel

Set the current finish button in the wizard.

setFinishButton(JButton) - Method in interface lisken.uitoolbox.WizardAwareComponent

Makes the component aware of the finish button.

setFlowing(boolean) - Method in class cage.CaGePipe

setFlowing(boolean) - Method in class cage.NativeCaGePipe

setFoldnetMade(boolean) - Method in class cage.CaGeResult

setFont(Font) - Method in class lisken.uitoolbox.AutosizedTextArea

setFont(Font) - Method in class lisken.uitoolbox.SpinButton

setFormat(int) - Method in class cage.NativeEmbeddableGraph

setGenerator(String[][]) - Method in class cage.GeneratorInfo

Sets the generator.

setGenerator(String[][]) - Method in class cage.StaticGeneratorInfo

setGeneratorInfo(GeneratorInfo) - Method in interface cage.CaGeOutlet

Sets the generator info provided for this outlet.

setGeneratorInfo(GeneratorInfo) - Method in class cage.OutputPanel

setGeneratorInfo(GeneratorInfo) - Method in class cage.viewer.CaGeJmolViewer

setGeneratorInfo(GeneratorInfo) - Method in class cage.viewer.jmol.CaGeJmolAdapter

setGeneratorInfo(GeneratorInfo) - Method in class cage.viewer.jmol.JmolPanel

setGeneratorInfo(GeneratorInfo) - Method in class cage.viewer.RasmolViewer

setGeneratorInfo(GeneratorInfo) - Method in class cage.viewer.TextViewer

setGeneratorInfo(GeneratorInfo) - Method in class cage.viewer.TwoView

setGeneratorInfo(GeneratorInfo) - Method in class cage.viewer.twoview.TwoViewPanel

setGeneratorInfo(GeneratorInfo) - Method in class cage.writer.AbstractChemicalWriter

setGeneratorInfo(GeneratorInfo) - Method in class cage.writer.CaGeWriter

setGeneratorInfoChanged() - Method in class cage.OutputPanel

setGeneratorName(String) - Method in class cage.GeneratorInfo

Sets the name of the generator

setGraph(EmbeddableGraph) - Method in class cage.viewer.jmol.CaGeJmolAdapter

setGraph(EmbeddableGraph) - Method in class cage.viewer.jmol.JmolPanel

setGraph(EmbeddableGraph) - Method in class cage.viewer.twoview.TwoViewPainter

setGraphNo(int) - Method in class cage.CaGePipe

setGraphNoFireInterval(int) - Method in class cage.CaGePipe

setGraphNoFireInterval(int) - Method in class cage.NativeCaGePipe

setInfo(String) - Method in class cage.SaveDialog

setIntensityFactor(float) - Method in class cage.Embedder

setInverted(boolean) - Method in class lisken.uitoolbox.EnhancedSlider

setLabelTable(Dictionary) - Method in class lisken.uitoolbox.EnhancedSlider

setLayout(LayoutManager) - Method in class lisken.uitoolbox.EnhancedSlider

setLayout(LayoutManager) - Method in class lisken.uitoolbox.SpinButton

setMajorTickSpacing(int) - Method in class lisken.uitoolbox.EnhancedSlider

setMaximum(int) - Method in class lisken.uitoolbox.EnhancedSlider

setMaximum(int) - Method in class lisken.uitoolbox.SpinButton

setmaxToPref(JComponent) - Static method in class lisken.uitoolbox.UItoolbox

Sets the maximum size of a component to its preferred size.

setMinimum(int) - Method in class lisken.uitoolbox.EnhancedSlider

setMinimum(int) - Method in class lisken.uitoolbox.SpinButton

setMinorTickSpacing(int) - Method in class lisken.uitoolbox.EnhancedSlider

setMode(int) - Method in class cage.Embedder

setModel(BoundedRangeModel) - Method in class lisken.uitoolbox.EnhancedSlider

setNearComponent(Component) - Method in class lisken.uitoolbox.FlaggedJDialog

setNextButton(JButton) - Method in class cage.CombinedGeneratorPanel

setNextButton(JButton) - Method in class cage.GeneratorPanel

Set the current next button in the wizard.

setNextButton(JButton) - Method in interface lisken.uitoolbox.WizardAwareComponent

Makes the component aware of the next button.

setOrientation(int) - Method in class lisken.uitoolbox.EnhancedSlider

setOutputStream(OutputStream) - Method in class cage.writer.CaGeWriter

setOutputStream(OutputStream) - Method in class cage.writer.NativePlanarWriter

setOutputStream(OutputStream) - Method in class cage.writer.NativeWritegraphWriter

setPaintArea(double, double, double, double) - Method in class cage.viewer.twoview.TwoViewPainter

setPaintLabels(boolean) - Method in class lisken.uitoolbox.EnhancedSlider

setPaintMinorTicks(boolean) - Method in class lisken.uitoolbox.EnhancedSlider

setPaintTicks(boolean) - Method in class lisken.uitoolbox.EnhancedSlider

setPaintTrack(boolean) - Method in class lisken.uitoolbox.EnhancedSlider

setPath(String) - Method in class cage.Embedder

setPath(String) - Method in class cage.FoldnetThread

setPath(String) - Method in class lisken.systoolbox.Pipe

setPositions(int[]) - Method in class lisken.uitoolbox.OrderedChoice

setPreviousButton(JButton) - Method in class cage.CombinedGeneratorPanel

setPreviousButton(JButton) - Method in class cage.GeneratorPanel

Set the current previous button in the wizard.

setPreviousButton(JButton) - Method in interface lisken.uitoolbox.WizardAwareComponent

Makes the component aware of the previous button.

setReembed2DMade(boolean) - Method in class cage.CaGeResult

setResultPanel(ResultPanel) - Method in class cage.viewer.CaGeJmolViewer

setResultPanel(ResultPanel) - Method in interface cage.viewer.CaGeViewer

Sets the ResultPanel connected with this viewer.

setResultPanel(ResultPanel) - Method in class cage.viewer.RasmolViewer

setResultPanel(ResultPanel) - Method in class cage.viewer.TextViewer

setResultPanel(ResultPanel) - Method in class cage.viewer.TwoView

setResultPanel(ResultPanel) - Method in class cage.viewer.twoview.TwoViewPanel

setRunDir(String) - Method in class cage.Embedder

setRunDir(String) - Method in class cage.FoldnetThread

setRunDir(String) - Method in class lisken.systoolbox.Pipe

setSaved2D(boolean) - Method in class cage.CaGeResult

setSaved2DPS(int) - Method in class cage.CaGeResult

setSaved3D(boolean) - Method in class cage.CaGeResult

setSavedAdj(boolean) - Method in class cage.CaGeResult

setSizeFactor(double) - Method in class lisken.uitoolbox.EnhancedSlider

setSizeIncluded(int, boolean) - Method in class cage.generator.SizeOptionsMap

setSnapToTicks(boolean) - Method in class lisken.uitoolbox.EnhancedSlider

setSnapWhileDragging(int) - Method in class lisken.uitoolbox.EnhancedSlider

Sets the sliders step size while dragging.

setStatus(String, int) - Method in class cage.ResultPanel

setStopButtonUsed() - Method in class cage.BackgroundWindow

setStopListener(ActionListener) - Method in class cage.ResultPanel

setSuccess(boolean) - Method in class lisken.uitoolbox.FlaggedJDialog

setTargetName(String) - Method in class cage.TargetPanel

setText(String) - Method in class lisken.uitoolbox.AutosizedTextArea

setValue(int) - Method in class lisken.systoolbox.MutableInteger

setValue(int) - Method in class lisken.uitoolbox.EnhancedSlider

setValue(int) - Method in class lisken.uitoolbox.SpinButton

setValueIsAdjusting(boolean) - Method in class lisken.uitoolbox.EnhancedSlider

setViewer(JmolViewer) - Method in class cage.viewer.jmol.JmolAction

setViewerSize(int, int) - Method in class cage.viewer.CaGeJmolViewer

setVisible(boolean) - Method in class cage.BackgroundWindow

setVisible(boolean) - Method in class cage.SaveDialog

setVisible(boolean) - Method in class cage.utility.ComponentLogicalGroup

Shows or hides the components in this group depending on the value of parameter visible.

setVisible(boolean) - Method in class cage.viewer.CaGeJmolViewer

setVisible(boolean) - Method in interface cage.viewer.CaGeViewer

setVisible(boolean) - Method in class cage.viewer.RasmolViewer

setVisible(boolean) - Method in class cage.viewer.TextViewer

setVisible(boolean) - Method in class cage.viewer.TwoView

setVisible(boolean) - Method in class lisken.uitoolbox.FlaggedJDialog

showEmbeddingException(Exception, String, String) - Method in class cage.BackgroundRunner

showEmbeddingException(Exception, String, String) - Method in interface cage.EmbedThreadListener

showEmbeddingException(Exception, String, String) - Method in class cage.ResultPanel

showException(Exception, String) - Method in interface cage.GeneratorListener

showException(Exception, String) - Method in class cage.ResultPanel

showing() - Method in class cage.CombinedGeneratorPanel

If there currently is a GeneratorPanel selected on the JTabbedPane, calls the showing() method of this panel.

showing() - Method in class cage.generator.BoundaryHCgenPanel

showing() - Method in class cage.generator.CGFPanel

showing() - Method in class cage.generator.DiskTriangulationsPanel

showing() - Method in class cage.generator.EulerianTriangulationsPanel

showing() - Method in class cage.generator.ExternalPanel

showing() - Method in class cage.generator.FormulaHCgenPanel

showing() - Method in class cage.generator.FullgenPanel

showing() - Method in class cage.generator.GeneralPlaneGraphsPanel

showing() - Method in class cage.generator.GeneralQuadrangulationsPanel

showing() - Method in class cage.generator.GeneralTriangulationsPanel

showing() - Method in class cage.generator.HexagonsHCgenPanel

showing() - Method in class cage.generator.NanoConesPanel

showing() - Method in class cage.generator.QuadRestrictPanel

showing() - Method in class cage.generator.TubesConesPanel

showing() - Method in class cage.generator.TubetypePanel

showing() - Method in class cage.GeneratorPanel

showing() - Method in class cage.OutputPanel

SHOWING - Static variable in class lisken.uitoolbox.Wizard

showNumbers(boolean) - Method in class cage.viewer.twoview.TwoViewPanel

showResult(CaGeResult) - Method in class cage.viewer.twoview.TwoViewPanel

showTextInfo(String, String) - Static method in class lisken.uitoolbox.UItoolbox

Shows a dialog with info and the specified title.

showTextInfo(String, String, boolean) - Static method in class lisken.uitoolbox.UItoolbox

Shows a dialog with info, the specified title and the specified font type.

showTextInfo(String, String, Component) - Static method in class lisken.uitoolbox.UItoolbox

Shows a dialog with info and the specified title near the given component.

showTextInfo(String, String, boolean, Component) - Static method in class lisken.uitoolbox.UItoolbox

Shows a dialog with info and the specified title near the given component.

ShowWindowAction - Class in cage.viewer.jmol

ShowWindowAction(String, JFrame) - Constructor for class cage.viewer.jmol.ShowWindowAction

SingleElementRule - Class in cage

An implementation of ElementRule that always returns the same element.

SingleElementRule(String) - Constructor for class cage.SingleElementRule

Create a new SingleElementRule object that always returns element.

size() - Method in exception lisken.systoolbox.ExceptionGroup

SizeOption - Class in cage.generator

This class represents the single configuration for one face type or vertex type and is used in SizeOptionsMap.

SizeOption(int, SizeOptionsMap) - Constructor for class cage.generator.SizeOption

SizeOptionsMap - Class in cage.generator

SizeOptionsMap(JPanel, Component, BoundedRangeModel, JToggleButton) - Constructor for class cage.generator.SizeOptionsMap

Creates a new SizeOptionsMap that allows a user to add certain allowed sizes (face sizes or vertex degrees).

SizeOptionsMap(JPanel, Component, BoundedRangeModel, JToggleButton, boolean, boolean) - Constructor for class cage.generator.SizeOptionsMap

Creates a new SizeOptionsMap that allows a user to add certain allowed face sizes or vertex degree (in case dual is true).

sizing() - Method in class lisken.uitoolbox.SpinButton

slider() - Method in class lisken.uitoolbox.EnhancedSlider

SpinButton - Class in lisken.uitoolbox

SpinButton() - Constructor for class lisken.uitoolbox.SpinButton

SpinButton(int, int, int) - Constructor for class lisken.uitoolbox.SpinButton

SpinButton(BoundedRangeModel) - Constructor for class lisken.uitoolbox.SpinButton

SpinButtonBeanInfo - Class in lisken.uitoolbox

SpinButtonBeanInfo() - Constructor for class lisken.uitoolbox.SpinButtonBeanInfo

start() - Method in class cage.BackgroundRunner

start() - Method in class cage.CaGePipe

start() - Method in class cage.CaGeStarter

start() - Method in class cage.CaGeTimer

start() - Method in class cage.NativeCaGePipe

start() - Method in class cage.ResultPanel

start() - Method in class lisken.systoolbox.Pipe

startEmbedding() - Method in class cage.embedder.NanoconeEmbedder

startEmbedding() - Method in class cage.embedder.NanotubeEmbedder

startPipe(Object[], int, int, byte[], byte[], boolean, byte[]) - Method in class lisken.systoolbox.Pipe

stateChanged(ChangeEvent) - Method in class cage.CombinedGeneratorPanel

stateChanged(ChangeEvent) - Method in class cage.generator.GeneralPlaneGraphsPanel

stateChanged(ChangeEvent) - Method in class cage.generator.QuadRestrictPanel

stateChanged(ChangeEvent) - Method in class cage.generator.SizeOption

stateChanged(ChangeEvent) - Method in class cage.generator.SizeOptionsMap

stateChanged(ChangeEvent) - Method in class cage.utility.Min1ButtonGroup

stateChanged(ChangeEvent) - Method in class cage.viewer.jmol.JmolColorChangeListener

stateChanged(ChangeEvent) - Method in class cage.viewer.jmol.JmolTranslucentColorChangeListener

stateChanged(ChangeEvent) - Method in class lisken.uitoolbox.MinMaxEqListener

stateChanged(ChangeEvent) - Method in class lisken.uitoolbox.PushButtonDecoration

stateChanged(ChangeEvent) - Method in class lisken.uitoolbox.SpinButton

StaticGeneratorInfo - Class in cage

Implementation of GeneratorInfo that sets all settings using setters and doesn't calculate any of the values.

StaticGeneratorInfo(String[][], Embedder, String, int) - Constructor for class cage.StaticGeneratorInfo

Creates a StaticGeneratorInfo object with the given generator commands, embedder, filename and maximum face size.

StaticGeneratorInfo(String[][], Embedder, String, int, boolean) - Constructor for class cage.StaticGeneratorInfo

Creates a StaticGeneratorInfo object with the given generator commands, embedder, filename and maximum face size.

StaticGeneratorInfo(String[][], Embedder, String, int, ElementRule) - Constructor for class cage.StaticGeneratorInfo

StaticGeneratorInfo(String[][], Embedder, String, int, boolean, ElementRule) - Constructor for class cage.StaticGeneratorInfo

StaticGeneratorInfo(String[][], Embedder, String, int, ElementRule, int) - Constructor for class cage.StaticGeneratorInfo

StaticGeneratorInfo(String[][], Embedder, String, int, boolean, ElementRule, int) - Constructor for class cage.StaticGeneratorInfo

stop() - Method in interface cage.CaGeOutlet

Called when this outlet is no longer needed.

stop() - Method in class cage.CaGeTimer

stop() - Method in class cage.NativeCaGePipe

stop() - Method in class cage.ResultPanel

stop() - Method in class cage.viewer.CaGeJmolViewer

stop() - Method in class cage.viewer.RasmolViewer

stop() - Method in class cage.viewer.TextViewer

stop() - Method in class cage.viewer.TwoView

stop() - Method in class cage.viewer.twoview.TwoViewPanel

stop() - Method in class cage.writer.CaGeWriter

stop() - Method in class lisken.systoolbox.Pipe

stringsToBytes(Object[]) - Static method in class lisken.systoolbox.Systoolbox

stringToArray(String) - Static method in class lisken.systoolbox.Systoolbox

stringToArray(String, SeparatorIndicator) - Static method in class lisken.systoolbox.Systoolbox

stringToVector(String) - Static method in class lisken.systoolbox.Systoolbox

stringToVector(String, SeparatorIndicator) - Static method in class lisken.systoolbox.Systoolbox

symmetryFilter() - Method in class cage.generator.FullgenPanel

SyncButtonGroup - Class in cage.utility

An implementation of GenericButtonGroup that represents a group where all the buttons have the same selection state.

SyncButtonGroup() - Constructor for class cage.utility.SyncButtonGroup

SysInfo - Class in util

Utility class for returning a processed system property.

Systoolbox - Class in lisken.systoolbox

Utility class that combines several static methods for system operations such as getting the environment, file operations and other minor utility methods.