A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

E

e_name - Variable in class lisken.systoolbox.Pipe

EdgeIterator - Interface in cage

Extension of the interface Iterator with an extra method to iterate over edges directly.

ElementRule - Interface in cage

An ElementRule object can be used to deduce the chemical element of an atom corresponding with a certain vertex in a graph.

embed(CaGeResult, PropertyChangeListener, boolean, boolean, boolean) - Method in class cage.EmbedThread

Schedules a new embedding to be calculated.

embed2D(EmbeddableGraph) - Method in class cage.Embedder

embed3D(EmbeddableGraph) - Method in class cage.Embedder

EMBED_EXPERT - Static variable in class cage.GeneratorInfo

The embed expert mode constant.

EMBED_LEVEL - Static variable in class cage.ResultPanel

embedAlways - Static variable in interface cage.EmbeddableGraph

EmbeddableGraph - Interface in cage

Embedder - Class in cage

Embedder() - Constructor for class cage.Embedder

embeddingChanged(CaGeResult) - Method in class cage.viewer.twoview.TwoViewPanel

embeddingFinished() - Method in class cage.BackgroundRunner

embeddingFinished() - Method in interface cage.EmbedThreadListener

embeddingFinished() - Method in class cage.ResultPanel

embeddingModified(CaGeViewer, CaGeResult) - Method in class cage.ResultPanel

EmbeddingTypeFactory - Interface in cage

Interface that defines a factory for embedding types.

EmbedFactory - Class in cage

Utility class for the creation of embedders.

EmbedFactory() - Constructor for class cage.EmbedFactory

embedIfRequired - Static variable in interface cage.EmbeddableGraph

EmbedThread - Class in cage

EmbedThread(Embedder, int) - Constructor for class cage.EmbedThread

Creates a new thread for running the given Embedder and that has its priority lowered by priorityOffset.

EmbedThreadListener - Interface in cage

enableEmbedControls(boolean) - Method in class cage.generator.ExternalPanel

Sets whether or not the embed controls are enabled.

encodeResult(CaGeResult) - Method in class cage.writer.AbstractChemicalWriter

encodeResult(CaGeResult) - Method in class cage.writer.CMLWriter

encodeResult(CaGeResult) - Method in class cage.writer.NativeCMLWriter

encodeResult(CaGeResult) - Method in class cage.writer.NativePDBWriter

end() - Method in class cage.EmbedThread

EnhancedSlider - Class in lisken.uitoolbox

EnhancedSlider() - Constructor for class lisken.uitoolbox.EnhancedSlider

EnhancedSlider(int, int, int, int) - Constructor for class lisken.uitoolbox.EnhancedSlider

EnhancedSliderBeanInfo - Class in lisken.uitoolbox

EnhancedSliderBeanInfo() - Constructor for class lisken.uitoolbox.EnhancedSliderBeanInfo

equals(Object) - Method in class lisken.systoolbox.MutableInteger

EulerianTriangulationsPanel - Class in cage.generator

EulerianTriangulationsPanel() - Constructor for class cage.generator.EulerianTriangulationsPanel

EulerianTriangulationsPanel(boolean) - Constructor for class cage.generator.EulerianTriangulationsPanel

EXCEPTION_LEVEL - Static variable in class cage.ResultPanel

ExceptionGroup - Exception in lisken.systoolbox

ExceptionGroup() - Constructor for exception lisken.systoolbox.ExceptionGroup

exit() - Static method in class cage.CaGe

exit() - Method in class cage.FoldnetThread

EXIT - Static variable in class lisken.uitoolbox.Wizard

expertMode - Static variable in class cage.CaGe

expertModeContains(int, boolean) - Method in class cage.GeneratorInfo

TODO

expertModeExcludes(int) - Method in class cage.GeneratorInfo

Returns whether the current expert modes exclude the given modes.

expertModeIncludes(int) - Method in class cage.GeneratorInfo

Returns whether the current expert modes include the given modes.

ExternalPanel - Class in cage.generator

Panel that allows the configuration of a generator that is not in CaGe by default.

ExternalPanel() - Constructor for class cage.generator.ExternalPanel