A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

G

GeneralPlaneGraphsPanel - Class in cage.generator

GeneralPlaneGraphsPanel() - Constructor for class cage.generator.GeneralPlaneGraphsPanel

GeneralQuadrangulationsPanel - Class in cage.generator

Configuration panel for general quadrangulations and 4-regular plane graphs.

GeneralQuadrangulationsPanel() - Constructor for class cage.generator.GeneralQuadrangulationsPanel

Constructs a non-dual GeneralQuadrangulationsPanel object.

GeneralQuadrangulationsPanel(boolean) - Constructor for class cage.generator.GeneralQuadrangulationsPanel

Constructs a GeneralQuadrangulationsPanel object.

GeneralTriangulationsPanel - Class in cage.generator

Configuration panel for general triangulations and 3-regular plane graphs.

GeneralTriangulationsPanel() - Constructor for class cage.generator.GeneralTriangulationsPanel

GeneralTriangulationsPanel(boolean) - Constructor for class cage.generator.GeneralTriangulationsPanel

generator - Static variable in class cage.CaGe

GENERATOR_EXPERT - Static variable in class cage.GeneratorInfo

The generator expert mode constant.

GeneratorChoiceListener - Class in cage

GeneratorChoiceListener() - Constructor for class cage.GeneratorChoiceListener

GeneratorInfo - Class in cage

Abstract class that represents the settings for a CaGe generator.

GeneratorInfo() - Constructor for class cage.GeneratorInfo

GeneratorListener - Interface in cage

GeneratorPanel - Class in cage

GeneratorPanel() - Constructor for class cage.GeneratorPanel

GeneratorParamsListener - Class in cage

GeneratorParamsListener(GeneratorPanel, String) - Constructor for class cage.GeneratorParamsListener

generators - Static variable in class cage.CaGe

GenericButtonGroup - Interface in cage.utility

An object implementing this interface represents a group of AbstractButtons.

get() - Method in class lisken.systoolbox.MessageQueue

get(String) - Static method in class util.SysInfo

Returns the system property with the name propertyName.

get2DCoordinates(int) - Method in interface cage.EmbeddableGraph

get2DCoordinates() - Method in interface cage.EmbeddableGraph

get2DCoordinates(int) - Method in class cage.NativeEmbeddableGraph

get2DCoordinates() - Method in class cage.NativeEmbeddableGraph

get3DCoordinates(int) - Method in interface cage.EmbeddableGraph

get3DCoordinates() - Method in interface cage.EmbeddableGraph

get3DCoordinates(int) - Method in class cage.NativeEmbeddableGraph

get3DCoordinates() - Method in class cage.NativeEmbeddableGraph

getAccessibleContext() - Method in class lisken.uitoolbox.EnhancedSlider

getActiveRunners() - Method in class cage.BackgroundWindow

getAllowEmptySelection() - Method in class lisken.uitoolbox.OrderedChoice

getAtomIterator(Object) - Method in class cage.viewer.jmol.CaGeJmolAdapter

getBondIterator(Object) - Method in class cage.viewer.jmol.CaGeJmolAdapter

getBoundingBox() - Method in class cage.viewer.twoview.TwoViewPainter

getButtonBorder() - Static method in class cage.BackgroundWindow

getButtonDist() - Static method in class cage.BackgroundWindow

getCaGeProperty(String) - Static method in class cage.CaGe

getCaGePropertyAsBoolean(String, boolean) - Static method in class cage.CaGe

getCaGePropertyAsInt(String, int) - Static method in class cage.CaGe

getCaGeViewer(String, int) - Static method in class cage.viewer.ViewerFactory

getCaGeWriter() - Method in class cage.FileFormatBox

getCaGeWriter() - Method in class cage.SaveDialog

getCaGeWriter() - Method in class cage.TargetPanel

getCancelButton() - Method in class cage.GeneratorPanel

Get the current cancel button in the wizard.

getCancelButton() - Method in class lisken.uitoolbox.WizardStage

getClickScrollByBlock() - Method in class lisken.uitoolbox.EnhancedSlider

getCommand() - Method in class cage.viewer.jmol.DefaultJmolAction

getCommand() - Method in class cage.viewer.jmol.JmolAction

getCommand() - Method in class cage.viewer.jmol.ViewAction

getCommand() - Method in class cage.viewer.jmol.ZoomAction

getComment() - Method in interface cage.EmbeddableGraph

getComment() - Method in class cage.NativeEmbeddableGraph

getContent() - Method in class lisken.uitoolbox.WizardStage

getContentFont() - Static method in class cage.BackgroundWindow

getCoordinate(double, double) - Method in class cage.viewer.twoview.TwoViewPainter

getCoordinatePoint(int) - Method in class cage.viewer.twoview.TwoViewPainter

getCurrentGraph() - Method in class cage.embedder.IO

getDefaultButton() - Method in class lisken.uitoolbox.FlaggedJDialog

getDiagnosticOutput() - Method in class cage.Embedder

getDiagnosticOutput() - Method in class cage.EmbedThread

getDialogCompleted() - Method in class lisken.uitoolbox.OrderedChoice

getDimension() - Method in interface cage.CaGeOutlet

Returns the dimension which is needed for this outlet.

getDimension() - Method in class cage.embedder.IO

getDimension() - Method in class cage.viewer.CaGeJmolViewer

getDimension() - Method in class cage.viewer.RasmolViewer

getDimension() - Method in class cage.viewer.TextViewer

getDimension() - Method in class cage.viewer.TwoView

getDimension() - Method in class cage.writer.CaGeWriter

getDisplayedRunners() - Method in class cage.BackgroundWindow

getEdgeBrightness() - Method in class cage.viewer.TwoView

getEdgeIterator(int) - Method in interface cage.EmbeddableGraph

getEdgeIterator(int) - Method in class cage.NativeEmbeddableGraph

getEdgeWidth() - Method in class cage.viewer.twoview.TwoViewPanel

getElement(EmbeddableGraph, int) - Method in interface cage.ElementRule

Returns the chemical symbol of the chemical element of the atom corresponding with vertex in graph.

getElement(EmbeddableGraph, int) - Method in class cage.SingleElementRule

Returns the chemical symbol of the chemical element of the atom which will always be the element set on construction of this rule.

getElement(EmbeddableGraph, int) - Method in class cage.ValencyElementRule

Returns the chemical symbol of the chemical element of the atom corresponding with vertex in graph by looking up the element for the degree of vertex.

getElementRule() - Method in class cage.GeneratorInfo

Returns the ElementRule to be used for graphs from this generator.

getElementRule() - Method in class cage.StaticGeneratorInfo

Returns the element rule to be used with this generator.

getElements() - Method in class cage.utility.AbstractButtonGroup

Returns an enumeration of the buttons in this group.

getElements() - Method in interface cage.utility.GenericButtonGroup

Returns an enumeration of the buttons in this group.

getEmbed2DNew() - Method in class cage.Embedder

getEmbed3DNew() - Method in class cage.Embedder

getEmbed3DRefine() - Method in class cage.Embedder

getEmbedder() - Method in class cage.GeneratorInfo

Returns the embedder to be used for this generator.

getEmbedder() - Method in class cage.StaticGeneratorInfo

getEmbedderFor(String) - Method in class cage.CaGeEmbeddingTypeFactory

getEmbedderFor(String) - Method in interface cage.EmbeddingTypeFactory

Returns a new Embedder for the given type or null if the type is unknown.

getEmbeddingTypeFactory(int) - Static method in class cage.CaGe

Returns the ith EmbeddingTypeFactory

getEmbeddingTypes() - Method in class cage.CaGeEmbeddingTypeFactory

getEmbeddingTypes() - Method in interface cage.EmbeddingTypeFactory

getEmbedThread() - Method in class cage.ResultPanel

getEmbedThreadListener() - Method in class cage.EmbedThread

getenv(String) - Static method in class lisken.systoolbox.Systoolbox

getenv(String, String) - Static method in class lisken.systoolbox.Systoolbox

getEstimatedAtomCount(Object) - Method in class cage.viewer.jmol.CaGeJmolAdapter

getExcludedExpertModes() - Method in class cage.GeneratorInfo

Returns the excluded expert modes.

getExitButton() - Method in class cage.GeneratorPanel

Get the current exit button in the wizard.

getExitButton() - Method in class lisken.uitoolbox.WizardStage

getExpertMode() - Method in class cage.GeneratorInfo

Returns the expert mode of this generator.

getExpertMode() - Method in class cage.StaticGeneratorInfo

getExtent() - Method in class lisken.uitoolbox.EnhancedSlider

getFD() - Method in class lisken.systoolbox.BufferedFDInputStream

getFD() - Method in class lisken.systoolbox.BufferedFDOutputStream

getFieldDist() - Static method in class cage.BackgroundWindow

getFileContent(String) - Static method in class lisken.systoolbox.Systoolbox

getFileContent(String, boolean) - Static method in class lisken.systoolbox.Systoolbox

getFileExtension() - Method in class cage.writer.CaGeWriter

getFileExtension() - Method in class cage.writer.CMLWriter

getFileExtension() - Method in class cage.writer.NativeCMLWriter

getFileExtension() - Method in class cage.writer.NativePDBWriter

getFileExtension() - Method in class cage.writer.NativePlanarWriter

getFileExtension() - Method in class cage.writer.NativeWritegraphWriter

getFilename() - Method in class cage.GeneratorInfo

Returns the filename of the output file.

getFilename() - Method in class cage.SaveDialog

getFilename() - Method in class cage.StaticGeneratorInfo

getFinishButton() - Method in class cage.GeneratorPanel

Get the current finish button in the wizard.

getFinishButton() - Method in class lisken.uitoolbox.WizardStage

getFont() - Method in class lisken.uitoolbox.SpinButton

getFormat() - Method in class cage.NativeEmbeddableGraph

getFormatName() - Method in class cage.writer.CaGeWriter

getFormatName() - Method in class cage.writer.CMLWriter

getFormatName() - Method in class cage.writer.NativeCMLWriter

getFormatName() - Method in class cage.writer.NativePDBWriter

getFormatName() - Method in class cage.writer.NativePlanarWriter

getFormatName() - Method in class cage.writer.NativeWritegraphWriter

getGenerator() - Method in class cage.GeneratorInfo

Returns the generator.

getGenerator() - Method in class cage.StaticGeneratorInfo

getGeneratorInfo() - Method in class cage.BackgroundRunner

getGeneratorInfo() - Method in class cage.CombinedGeneratorPanel

If there currently is a GeneratorPanel selected on the JTabbedPane, calls the getGeneratorInfo() method of this panel and returns that GeneratorInfo.

getGeneratorInfo() - Method in class cage.generator.BoundaryHCgenPanel

getGeneratorInfo() - Method in class cage.generator.CGFPanel

getGeneratorInfo() - Method in class cage.generator.DiskTriangulationsPanel

getGeneratorInfo() - Method in class cage.generator.EulerianTriangulationsPanel

getGeneratorInfo() - Method in class cage.generator.ExternalPanel

getGeneratorInfo() - Method in class cage.generator.FormulaHCgenPanel

getGeneratorInfo() - Method in class cage.generator.FullgenPanel

getGeneratorInfo() - Method in class cage.generator.GeneralPlaneGraphsPanel

getGeneratorInfo() - Method in class cage.generator.GeneralQuadrangulationsPanel

getGeneratorInfo() - Method in class cage.generator.GeneralTriangulationsPanel

getGeneratorInfo() - Method in class cage.generator.HexagonsHCgenPanel

getGeneratorInfo() - Method in class cage.generator.NanoConesPanel

getGeneratorInfo() - Method in class cage.generator.QuadRestrictPanel

Construct the generator info for this generator.

getGeneratorInfo() - Method in class cage.generator.TriangulationsPanel

getGeneratorInfo() - Method in class cage.generator.TubesConesPanel

getGeneratorInfo() - Method in class cage.generator.TubetypePanel

getGeneratorInfo() - Method in class cage.GeneratorPanel

getGeneratorInfo() - Method in class cage.OutputPanel

getGeneratorName() - Method in class cage.GeneratorInfo

Returns the name of the generator.

getGraph() - Method in class cage.CaGePipe

getGraph() - Method in class cage.CaGeResult

getGraph() - Method in class cage.CaGeResultList

getGraph() - Method in class cage.NativeCaGePipe

getGraph() - Method in class cage.viewer.jmol.CaGeJmolAdapter

getGraphCoords() - Method in class cage.embedder.IO

getGraphNo() - Method in class cage.BackgroundRunner

getGraphNo() - Method in class cage.CaGePipe

getGraphNo() - Method in class cage.CaGeResult

getGraphNo() - Method in class cage.CaGeResultList

getGraphNo() - Method in interface cage.CaGeRunner

getGraphSize() - Method in class cage.viewer.twoview.TwoViewPainter

getIcon(int) - Method in class lisken.uitoolbox.EnhancedSliderBeanInfo

getIcon(int) - Method in class lisken.uitoolbox.SpinButtonBeanInfo

getIncludedExpertModes() - Method in class cage.GeneratorInfo

Returns the included expert modes.

getInfo() - Method in class cage.SaveDialog

getInputStream() - Method in class lisken.systoolbox.Pipe

getInverted() - Method in class lisken.uitoolbox.EnhancedSlider

getJMenuBar(JmolPanel, JmolViewer, JFrame) - Static method in class cage.viewer.jmol.JmolMenu

Factory class to create a JMenuBar for a window controlling a JmolViewer and a JmolPanel.

getLabelDist() - Static method in class cage.BackgroundWindow

getLabelTable() - Method in class lisken.uitoolbox.EnhancedSlider

getLayout() - Method in class lisken.uitoolbox.EnhancedSlider

getLayout() - Method in class lisken.uitoolbox.SpinButton

getListener() - Method in class lisken.uitoolbox.WizardStage

getMajorTickSpacing() - Method in class lisken.uitoolbox.EnhancedSlider

getMax() - Method in class cage.generator.SizeOption

Returns the upper bound set for these kind of faces/vertices.

getMaxFacesize() - Method in class cage.GeneratorInfo

Returns the maximum size of a face in the graphs from this generator.

getMaxFacesize() - Method in class cage.StaticGeneratorInfo

getMaximum() - Method in class lisken.uitoolbox.EnhancedSlider

getMaximum() - Method in class lisken.uitoolbox.SpinButton

getMessage() - Method in exception lisken.systoolbox.ExceptionGroup

getMin() - Method in class cage.generator.SizeOption

Returns the lower bound set for these kind of faces/vertices.

getMinimum() - Method in class lisken.uitoolbox.EnhancedSlider

getMinimum() - Method in class lisken.uitoolbox.SpinButton

getMinorTickSpacing() - Method in class lisken.uitoolbox.EnhancedSlider

getMode() - Method in class cage.Embedder

getModel() - Method in class lisken.uitoolbox.EnhancedSlider

getModel() - Method in class lisken.uitoolbox.SpinButton

getNextButton() - Method in class cage.GeneratorPanel

Get the current next button in the wizard.

getNextButton() - Method in class lisken.uitoolbox.WizardStage

getNumberOfEmbeddingTypeFactories() - Static method in class cage.CaGe

Returns the number of EmbeddingTypeFactory instances that are registered.

getNumberOfVertices() - Method in class cage.embedder.IO

getOrientation() - Method in class lisken.uitoolbox.EnhancedSlider

getOutputStream() - Method in class lisken.systoolbox.Pipe

getPaintLabels() - Method in class lisken.uitoolbox.EnhancedSlider

getPaintMinorTicks() - Method in class lisken.uitoolbox.EnhancedSlider

getPaintTicks() - Method in class lisken.uitoolbox.EnhancedSlider

getPaintTrack() - Method in class lisken.uitoolbox.EnhancedSlider

getPoint(double, double) - Method in class cage.viewer.twoview.TwoViewPainter

getPreferredScrollableViewportSize() - Method in class lisken.uitoolbox.AutosizedTextArea

getPreferredSize() - Method in class cage.viewer.jmol.JmolPanel

getPreferredSize() - Method in class lisken.uitoolbox.EnhancedSlider

getPreFilter() - Method in class cage.OutputPanel

getPreviousButton() - Method in class cage.GeneratorPanel

Get the current previous button in the wizard.

getPreviousButton() - Method in class lisken.uitoolbox.WizardStage

getPropertyDescriptors() - Method in class lisken.uitoolbox.EnhancedSliderBeanInfo

getPropertyDescriptors() - Method in class lisken.uitoolbox.SpinButtonBeanInfo

getResult() - Method in class cage.CaGeResultList

getSaved2DPS() - Method in class cage.CaGeResult

getSelection() - Method in class cage.utility.AbstractButtonGroup

Always returns null.

getSelection() - Method in class lisken.uitoolbox.OrderedChoice

getShowNumbers() - Method in class cage.viewer.twoview.TwoViewPanel

getSize() - Method in interface cage.EmbeddableGraph

Returns the order of the graph, i.e.

getSize() - Method in class cage.generator.SizeOption

Returns the size that is represented by this SizeOption.

getSize() - Method in class cage.NativeEmbeddableGraph

getSliderUI() - Method in class lisken.uitoolbox.EnhancedSlider

getSnapToTicks() - Method in class lisken.uitoolbox.EnhancedSlider

getSnapWhileDragging() - Method in class lisken.uitoolbox.EnhancedSlider

Returns the sliders step size while dragging.

getStackTrace(Exception) - Static method in class lisken.systoolbox.Systoolbox

getStage() - Method in class lisken.uitoolbox.Wizard

Returns the current stage of this Wizard.

getStageNo() - Method in class lisken.uitoolbox.Wizard

getSuccess() - Method in class lisken.uitoolbox.FlaggedJDialog

getSystemProperty(String) - Static method in class cage.CaGe

getTargetName() - Method in class cage.TargetPanel

getTitle(Window) - Static method in class lisken.uitoolbox.UItoolbox

Returns the title of a window if it's a Frame or a Dialog or null otherwise.

getValency(int) - Method in interface cage.EmbeddableGraph

Returns the valency of vertex i.e.

getValency(int) - Method in class cage.NativeEmbeddableGraph

getValue() - Method in class lisken.uitoolbox.EnhancedSlider

getValue() - Method in class lisken.uitoolbox.SpinButton

getValueIsAdjusting() - Method in class lisken.uitoolbox.EnhancedSlider

getValueLabel() - Method in class lisken.uitoolbox.EnhancedSlider

getVertexSize() - Method in class cage.viewer.twoview.TwoViewPanel

getViewer() - Method in class cage.viewer.jmol.JmolAction

getViewer() - Method in class cage.viewer.jmol.JmolPanel

getViewerErrors() - Method in class cage.OutputPanel

getViewers() - Method in class cage.OutputPanel

getWindow() - Method in class lisken.uitoolbox.Wizard

getWizardStage() - Static method in class cage.CaGe

getWizardWindow() - Static method in class cage.CaGe

getWriteDestinations() - Method in class cage.BackgroundRunner

getWriteDestinations() - Method in class cage.OutputPanel

getWriters() - Method in class cage.BackgroundRunner

getWriters() - Method in class cage.OutputPanel

gotoFound() - Method in class cage.CaGeResultList

gotoHighest() - Method in class cage.CaGeResultList

graph - Variable in class cage.CaGeResult

graphNo - Variable in class cage.CaGeResult

graphNoDigits - Static variable in class cage.CaGe